Basic Information
Locus ID:
Seu_jg9136
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 7809289 | 7814154 | - | Seu_jg9136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 69,748.53 Da | 39.84 | 85.05 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 28 | 117 | 4.9E-6 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 211 | 464 | 5.9E-86 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 6.28E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 10 | 121 | 4.9E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 29 | 127 | 0.0091 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 488 | 85.555458 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 10.861095 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 616 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_010679621.1 | BTB/POZ domain-containing protein NPY4 [Beta vulgaris subsp. vulgaris] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N4D8 | BTB/POZ domain-containing protein NPY4 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology