Basic Information
Locus ID:
Seu_jg8823
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 3707971 | 3725611 | - | Seu_jg8823 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 139,789.59 Da | 49.56 | 76.75 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 311 | 439 | 3.53029E-13 | - |
| CDD | cd12108 | Hr-like | 658 | 814 | 8.67224E-30 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1123 | 1166 | 1.2198E-16 | - |
| CDD | cd12108 | Hr-like | 52 | 178 | 7.10047E-33 | - |
| Pfam | PF14599 | Zinc-ribbon | 1171 | 1221 | 4.9E-17 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 654 | 815 | 3.5E-9 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1123 | 1165 | 1.4E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 995 | 1070 | 2.5E-17 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 312 | 441 | 1.8E-5 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 54 | 180 | 5.2E-12 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1061 | 1116 | 5.49E-15 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1123 | 1169 | 1.37E-7 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 986 | 1051 | 5.62E-7 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 313 | 457 | 4.9E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 650 | 901 | 1.8E-26 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1195 | 1225 | 6.1E-10 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 48 | 198 | 3.7E-34 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1119 | 1168 | 6.0E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 1124 | 1165 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 988 | 1057 | 25.671211 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1060 | 1123 | 28.976147 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1124 | 1166 | 11.176261 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_021842412.1 | zinc finger protein BRUTUS [Spinacia oleracea] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUB5 | Zinc finger protein BRUTUS OS=Spinacia oleracea OX=3562 GN=SOVF_140190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology