Basic Information
Locus ID:
Seu_jg8786
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 3301610 | 3303172 | + | Seu_jg8786 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 58,497.17 Da | 40.03 | 78.14 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 28 | 63 | 3.9E-8 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 239 | 361 | 1.3E-5 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 86 | 1.27E-8 | IPR036047 |
| SMART | SM00256 | fbox_2 | 23 | 63 | 1.4E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 121 | 316 | 1.2E-21 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70970.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010681442.2 | F-box protein At1g30790 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SSK2 | Putative F-box protein At1g70970 OS=Arabidopsis thaliana OX=3702 GN=At1g70970 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803L7D3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026116 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g140770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12802, Sbi_jg53088 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8786 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026943 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34072, Sgl34296, Sgl39698 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001075, gene:ENSEOMG00000003759 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0015700, CQ.Regalona.r1.6BG0016560 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G23433 |