Basic Information
Locus ID:
Seu_jg8778
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 3223201 | 3223725 | - | Seu_jg8778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.34 | 19,243.17 Da | 33.27 | 83.62 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 88 | 149 | 5.76306E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 10 | 71 | 1.4E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 87 | 149 | 6.3E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 2 | 149 | 7.0E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 79 | 169 | 5.6E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 78 | 1.8E-17 | - |
| SMART | SM00054 | efh_1 | 124 | 152 | 2.1E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 88 | 116 | 0.0011 | IPR002048 |
| SMART | SM00054 | efh_1 | 47 | 75 | 2.3 | IPR002048 |
| SMART | SM00054 | efh_1 | 11 | 39 | 0.0066 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 84 | 119 | 14.094975 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 43 | 78 | 9.63171 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 120 | 155 | 14.011288 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 7 | 42 | 14.06708 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 97 | 109 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 133 | 145 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 20 | 32 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 56 | 68 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_021755251.1 | probable calcium-binding protein CML15 [Chenopodium quinoa] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QEY9 | Calcium-binding protein CML16 OS=Spinacia oleracea OX=3562 GN=SOVF_186650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology