Basic Information
Locus ID:
Seu_jg8764
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 3009557 | 3014352 | - | Seu_jg8764 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 60,135.17 Da | 32.00 | 84.67 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 417 | 494 | 1.09575E-15 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 387 | 494 | 5.8E-23 | IPR002156 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 27 | 280 | 7.98E-5 | IPR011043 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 370 | 494 | 5.31E-8 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 372 | 497 | 2.8E-13 | IPR036397 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 17 | 259 | 1.7E-16 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021865347.1 | F-box/kelch-repeat protein At3g23880-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9RTN5 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_029950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026024 |
| Amaranthaceae | Salicornia bigelovii | 32 | Sbi_jg12102, Sbi_jg12547, Sbi_jg12774, Sbi_jg12776 ... |
| Amaranthaceae | Salicornia europaea | 24 | Seu_jg10045, Seu_jg10048, Seu_jg10051, Seu_jg10052 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018958 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl34095 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0016320 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1767, evm.TU.LG20.131 |