Basic Information
Locus ID:
Seu_jg8759
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000006l | 2983024 | 2984358 | - | Seu_jg8759 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 29,565.74 Da | 31.32 | 95.92 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 91 | 189 | 9.6E-8 | IPR006527 |
| Pfam | PF12937 | F-box-like | 1 | 40 | 6.4E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 53 | 5.63E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 59 | 2.5E-9 | - |
| SMART | SM00256 | fbox_2 | 4 | 45 | 1.6E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 44 | 9.788908 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026024 |
| Amaranthaceae | Salicornia bigelovii | 32 | Sbi_jg12102, Sbi_jg12547, Sbi_jg12774, Sbi_jg12776 ... |
| Amaranthaceae | Salicornia europaea | 24 | Seu_jg10045, Seu_jg10048, Seu_jg10051, Seu_jg10052 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018958 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl34095 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0016320 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1767, evm.TU.LG20.131 |