Basic Information
Locus ID:
Seu_jg8447
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 55613340 | 55621990 | - | Seu_jg8447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 28,654.61 Da | 45.50 | 99.76 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 65 | 113 | 3.08103E-18 | - |
| Pfam | PF12906 | RING-variant domain | 65 | 112 | 2.7E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 61 | 116 | 4.86E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 117 | 1.0E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 64 | 113 | 7.3E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 57 | 119 | 20.740938 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010694496.1 | E3 ubiquitin-protein ligase MARCHF8 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0J8BEF4 | RING-CH-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g093560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology