Basic Information
Locus ID:
Seu_jg835
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 9478164 | 9484328 | - | Seu_jg835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 63,978.10 Da | 47.18 | 81.48 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 213 | 537 | 1.8E-88 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 177 | 566 | 6.29E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 165 | 565 | 2.6E-120 | IPR012334 |
| SMART | SM00710 | pbh1 | 371 | 392 | 28.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 344 | 370 | 780.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 394 | 414 | 5200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 453 | 474 | 5200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 424 | 445 | 0.4 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 401 | 414 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56710.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_010674532.2 | polygalacturonase At1g48100 [Beta vulgaris subsp. vulgaris] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RUV7 | Polygalacturonase At1g80170 OS=Spinacia oleracea OX=3562 GN=SOVF_025850 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology