Basic Information
Locus ID:
Seu_jg8008
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 48753706 | 48778804 | + | Seu_jg8008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 125,267.23 Da | 50.74 | 81.00 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 785 | 825 | 1.02953E-18 | - |
| Pfam | PF16135 | Tify domain binding domain | 380 | 435 | 1.7E-11 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 719 | 768 | 8.2E-16 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 786 | 827 | 3.2E-8 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1029 | 1116 | 3.72E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 873 | 927 | 1.28E-9 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 771 | 827 | 1.52E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 872 | 932 | 4.6E-12 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 772 | 861 | 7.5E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 873 | 929 | 0.0058 | IPR001965 |
| SMART | SM00249 | PHD_3 | 785 | 826 | 2.9E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 783 | 828 | 10.282101 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 786 | 825 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 663 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 579 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021774585.1 | uncharacterized protein LOC110738482 [Chenopodium quinoa] | 0 |
| Q14839 | Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens OX=9606 GN=CHD4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QNE0 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_164770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology