Basic Information
Locus ID:
Seu_jg7729
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Tudor PWWP MBT superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 42407889 | 42411386 | + | Seu_jg7729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 85,886.63 Da | 33.34 | 72.06 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 220 | 301 | 2.39069E-25 | - |
| CDD | cd00590 | RRM_SF | 682 | 734 | 0.00147237 | - |
| Pfam | PF00855 | PWWP domain | 222 | 303 | 2.7E-15 | IPR000313 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 666 | 748 | 4.34E-7 | IPR035979 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 220 | 328 | 3.25E-23 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 208 | 313 | 8.4E-22 | - |
| SMART | SM00293 | PWWP_4 | 220 | 281 | 6.6E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 222 | 283 | 13.583243 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 770 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 462 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021865134.1 | uncharacterized protein LOC110803906 [Spinacia oleracea] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RXW3 | PWWP domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_016280 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology