Basic Information
Locus ID:
Seu_jg7718
Species & Taxonomic ID:
Salicornia europaea & 206448
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 42239215 | 42253476 | + | Seu_jg7718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 175,697.45 Da | 50.48 | 88.88 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1188 | 1583 | 2.44934E-108 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1236 | 1585 | 1.2E-80 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 116 | 545 | 6.91E-36 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1179 | 1578 | 1.7E-92 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 102 | 550 | 3.5E-47 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1136 | 1358 | 1.2E-36 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1471 | 1583 | 1.9E-32 | - |
| SMART | SM00119 | hect_3 | 1198 | 1585 | 9.2E-95 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1209 | 1585 | 61.729603 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 71 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_021751622.1 | E3 ubiquitin-protein ligase UPL4-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0J8B6J2 | HECT-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_007490 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology