Basic Information
Locus ID:
Seu_jg735
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 8317496 | 8318537 | - | Seu_jg735 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 34,046.74 Da | 49.88 | 69.90 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 141 | 206 | 9.7E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 210 | 1.87E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 72 | 149 | 2.61E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 212 | 265 | 8.83E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 154 | 2.6E-11 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 202 | 299 | 9.4E-19 | - |
| SMART | SM00647 | ibrneu5 | 207 | 272 | 0.21 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 140 | 206 | 8.5E-23 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 70 | 276 | 36.550346 | IPR044066 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010679272.2 | probable E3 ubiquitin-protein ligase ARI5 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8L829 | Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana OX=3702 GN=ARI5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RW54 | RBR-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_022340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg17479, Sbi_jg62121, Sbi_jg62122 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg735 |