Basic Information
Locus ID:
Seu_jg6824
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 18276402 | 18288666 | - | Seu_jg6824 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 96,272.14 Da | 48.62 | 107.97 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 754 | 796 | 1.1E-8 | IPR006566 |
| Pfam | PF08387 | FBD | 327 | 367 | 1.1E-8 | IPR006566 |
| Pfam | PF00646 | F-box domain | 18 | 57 | 8.7E-8 | IPR001810 |
| Pfam | PF00646 | F-box domain | 418 | 457 | 3.5E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 416 | 465 | 1.57E-10 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 116 | 720 | 4.08E-5 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 133 | 352 | 6.91E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 70 | 1.44E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 13 | 339 | 1.7E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 546 | 800 | 5.1E-6 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 403 | 454 | 9.1E-6 | - |
| SMART | SM00256 | fbox_2 | 22 | 62 | 0.0028 | IPR001810 |
| SMART | SM00256 | fbox_2 | 422 | 462 | 0.0083 | IPR001810 |
| SMART | SM00579 | 9598neu4hmm | 330 | 393 | 0.065 | IPR006566 |
| SMART | SM00579 | 9598neu4hmm | 758 | 833 | 2.8E-5 | IPR006566 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15060.1 | 0 | |
| RefSeq | XP_021759620.1 | uncharacterized protein LOC110724506 [Chenopodium quinoa] | 0 |
| Q94B46 | F-box/LRR-repeat protein At4g14096 OS=Arabidopsis thaliana OX=3702 GN=At4g14096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7N2M971 | F-box domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah023533 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg51947 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6824, Seu_jg9920 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11645, Sgl17142 |