Basic Information
Locus ID:
Seu_jg6662
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 15899799 | 15907807 | - | Seu_jg6662 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 162,096.94 Da | 38.06 | 103.94 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 887 | 1181 | 3.20561E-88 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 260 | 548 | 2.34516E-102 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1204 | 1424 | 2.23596E-124 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 574 | 778 | 2.09709E-108 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 262 | 526 | 1.3E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 899 | 1133 | 1.7E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1223 | 1371 | 2.0E-28 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 596 | 730 | 5.1E-20 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 580 | 794 | 1.16E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 250 | 548 | 4.05E-33 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 887 | 1188 | 6.15E-47 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1197 | 1435 | 3.26E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 588 | 819 | 3.6E-69 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 851 | 1187 | 2.3E-51 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 229 | 558 | 1.3E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1189 | 1441 | 6.1E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 605 | 778 | 6.0E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1232 | 1424 | 1.2E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 889 | 1169 | 30.907257 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 571 | 801 | 21.662109 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1208 | 1440 | 16.693481 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 264 | 540 | 34.348793 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 703 | 717 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 838 | 855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 826 | 855 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021853038.1 | putative ABC transporter C family member 15 [Spinacia oleracea] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R2A4 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_114980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology