Basic Information
Locus ID:
Seu_jg6462
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 12938829 | 12943127 | + | Seu_jg6462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 30,754.39 Da | 36.71 | 89.64 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 53 | 103 | 2.49E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 52 | 102 | 3.2E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027122451.1 | uncharacterized protein LOC113739437 isoform X2 [Coffea arabica] | 0 |
| TrEMBL | A0A5B6YYW5 | F-box domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_005604 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_17537, gene_17538, gene_18174, gene_18175, gene_18176 ... |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014614, Ah014657 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g002990 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg28880 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6462, Seu_jg6840 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl02564, Sgl07719, Sgl29549 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004485, gene:ENSEOMG00000007793 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0005320, CQ.Regalona.r1.8BG0004300 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285400 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.284 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18723 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611587 |