Basic Information
Locus ID:
Seu_jg6301
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 10487130 | 10493659 | - | Seu_jg6301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 64,070.83 Da | 50.66 | 57.07 | -1.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 436 | 520 | 1.2E-17 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 537 | 567 | 2.4E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 435 | 520 | 4.7E-26 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 392 | - | - |
| Coils | Coil | Coil | 441 | 466 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_021768735.1 | uncharacterized protein LOC110733032 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9RW66 | PAPA-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_027370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology