Basic Information
Locus ID:
Seu_jg5622
Species & Taxonomic ID:
Salicornia europaea & 206448
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 1385354 | 1394561 | + | Seu_jg5622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 119,872.47 Da | 48.33 | 70.84 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 556 | 860 | 1.39523E-131 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 557 | 859 | 1.7E-42 | IPR001394 |
| Pfam | PF01753 | MYND finger | 79 | 116 | 1.3E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 75 | 118 | 5.06E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 554 | 864 | 4.32E-82 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 68 | 122 | 6.3E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 550 | 871 | 6.2E-89 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 557 | 862 | 49.273029 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 79 | 116 | 11.412541 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 558 | 573 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1029 | 1103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 988 | 1007 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 988 | 1008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1070 | 1103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1032 | 1068 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 887 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 303 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021743660.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LUZ4 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology