Basic Information
Locus ID:
Seu_jg5615
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000009l | 1323528 | 1338691 | + | Seu_jg5615 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 116,750.88 Da | 55.11 | 60.18 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 41 | 140 | 1.7823E-13 | - |
| CDD | cd00159 | RhoGAP | 201 | 355 | 4.71096E-32 | - |
| Pfam | PF00169 | PH domain | 40 | 144 | 1.0E-12 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 201 | 344 | 1.6E-24 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 638 | 707 | 3.6E-8 | IPR025757 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 201 | 394 | 1.86E-29 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 13 | 145 | 7.77E-18 | - |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 170 | 393 | 7.6E-36 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 29 | 146 | 1.4E-18 | IPR011993 |
| SMART | SM00233 | PH_update | 39 | 147 | 4.5E-16 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 198 | 389 | 1.9E-18 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 192 | 392 | 26.839121 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 38 | 145 | 15.8893 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 902 | 940 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 794 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 735 | 763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 941 | 1004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1006 | 1032 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 872 | 1053 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 872 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 543 | - | - |
| Coils | Coil | Coil | 852 | 872 | - | - |
| Coils | Coil | Coil | 596 | 623 | - | - |
| Coils | Coil | Coil | 683 | 710 | - | - |
| Coils | Coil | Coil | 628 | 669 | - | - |
| Coils | Coil | Coil | 126 | 146 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24580.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube. | 0 |
| RefSeq | XP_010675320.1 | rho GTPase-activating protein REN1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4JQZ3 | Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana OX=3702 GN=REN1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803MEH0 | Rho GTPase-activating protein REN1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology