Basic Information
Locus ID:
Seu_jg5237
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000018l | 1334120 | 1338394 | + | Seu_jg5237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 60,230.60 Da | 39.69 | 87.46 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 64 | 224 | 3.7E-19 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 403 | 462 | 1.4E-8 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 59 | 228 | 8.01E-26 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 64 | 232 | 7.0E-32 | IPR036465 |
| SMART | SM00327 | VWA_4 | 62 | 238 | 4.8E-18 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 64 | 240 | 16.539812 | IPR002035 |
| Coils | Coil | Coil | 542 | 543 | - | - |
| Coils | Coil | Coil | 136 | 156 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_010675833.1 | E3 ubiquitin-protein ligase WAV3 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QQR0 | VWFA domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_152240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology