Basic Information
Locus ID:
Seu_jg4939
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 51280761 | 51281501 | + | Seu_jg4939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 27,031.15 Da | 68.66 | 78.50 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 43 | 93 | 1.96084E-23 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 45 | 91 | 2.9E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 105 | 8.25E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 106 | 2.9E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 45 | 91 | 1.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 45 | 92 | 12.563043 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 60 | 69 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_010695001.2 | E3 ubiquitin-protein ligase RMA3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BD21 | RING-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g096870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology