Basic Information
Locus ID:
Seu_jg4907
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 50726842 | 50733763 | - | Seu_jg4907 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 97,855.59 Da | 54.42 | 77.38 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 746 | 781 | 8.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 650 | 688 | 2.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 567 | 594 | 0.25 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 564 | 883 | 4.65E-53 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 92 | 356 | 5.29E-20 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 92 | 355 | 1.0E-24 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 541 | 886 | 3.9E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 840 | 884 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 700 | 739 | 0.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 790 | 829 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 560 | 595 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 648 | 688 | 3.7E-9 | IPR001680 |
| SMART | SM00220 | serkin_6 | 66 | 345 | 3.8E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 743 | 781 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 606 | 645 | 4.6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 655 | 690 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 750 | 784 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 345 | 9.064854 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 750 | 784 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 655 | 690 | 10.627413 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 768 | 782 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 675 | 689 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 768 | 782 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 632 | 646 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 527 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_010694977.2 | protein SPA1-RELATED 4 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8BAN3 | Protein kinase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g096680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology