Basic Information
Locus ID:
Seu_jg4731
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 47772012 | 47781998 | - | Seu_jg4731 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 82,200.17 Da | 37.52 | 89.60 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 355 | 655 | 7.67223E-147 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 39 | 338 | 3.04179E-159 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 360 | 651 | 2.8E-21 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 74 | 333 | 5.9E-6 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 354 | 655 | 1.44E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 39 | 338 | 1.52E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 353 | 656 | 1.6E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 38 | 338 | 1.4E-33 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 39 | 339 | 31.398056 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 355 | 656 | 33.476799 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 733 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_021759066.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Chenopodium quinoa] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RMD6 | glycerophosphodiester phosphodiesterase OS=Spinacia oleracea OX=3562 GN=SOVF_050330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology