Basic Information
Locus ID:
Seu_jg4652
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 46527471 | 46539631 | - | Seu_jg4652 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 78,721.08 Da | 40.72 | 79.56 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 357 | 392 | 1.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 608 | 639 | 0.025 | IPR001680 |
| Pfam | PF08145 | BOP1NT (NUC169) domain | 99 | 354 | 1.1E-99 | IPR012953 |
| Pfam | PF00400 | WD domain, G-beta repeat | 656 | 695 | 4.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 319 | 695 | 7.02E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 345 | 697 | 1.6E-132 | IPR015943 |
| SMART | SM01035 | BOP1NT_2 | 99 | 354 | 1.0E-138 | IPR012953 |
| SMART | SM00320 | WD40_4 | 396 | 435 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 641 | 8.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 559 | 598 | 0.51 | IPR001680 |
| SMART | SM00320 | WD40_4 | 354 | 393 | 6.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 653 | 696 | 3.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 556 | 150.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 361 | 402 | 15.989036 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 361 | 398 | 12.156496 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 380 | 394 | - | IPR019775 |
| Hamap | MF_03027 | Ribosome biogenesis protein @gn(BOP1) [BOP1]. | 1 | 696 | 43.618156 | IPR028598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 45 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40360.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021852212.1 | ribosome biogenesis protein BOP1 homolog isoform X1 [Spinacia oleracea] | 0 |
| F4IH25 | Ribosome biogenesis protein BOP1 homolog OS=Arabidopsis thaliana OX=3702 GN=BOP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QCN0 | Ribosome biogenesis protein BOP1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_194350 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29950 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24181 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah026706, Ah026707 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g138740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18327, Sbi_jg36706 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4652 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013517, GOSA_00013518 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34219, Sgl39517, Sgl39562 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001074, gene:ENSEOMG00000003254 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0018840, CQ.Regalona.r1.6BG0019890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30111660 |
| Apiaceae | Apium graveolens | 4 | Ag1G00714, Ag6G02836, Ag9G01525, AgUnG00063 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G008500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721398 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.1845.V1.1, AsparagusV1_03.229.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G06808, Ftri15G16982 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G40360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001320m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27170.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g003520.2N, BniB06g003570.2N, BniB08g029370.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G2158, Ceq07G2177 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2388 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g02260 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.1024s00003.v1.0, Dusal.1024s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01370 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6784 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG08.778, evm.TU.LG08.779, evm.TU.LG08.795 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001957 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15169 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1350, BH08.1556, CH08.1579 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0599220 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0505300.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049929 |
| Poaceae | Oryza coarctata | 2 | Oco13G005510, Oco14G006200 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g25440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G078500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0207426, Pt_Chr0604862 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G001790, Chr04G031340, Chr07G030350, Chr12G033500 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G577300, Tel6E01G786900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG035400, gene_TRIDC5AG052800 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G360900.2, TraesCS5B02G363500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb131370_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15470 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g191 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g00690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1470 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3736, nbisL1-mrna-3739 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6051 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18888 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.433 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005331 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2864, nbisL1-mrna-2865 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19176 |
| Salicaceae | Populus euphratica | 1 | populus_peu08269 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598660 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007762 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15438 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0676 |
| Zosteraceae | Zostera marina | 1 | Zosma01g19900.v3.1 |