Basic Information
Locus ID:
Seu_jg4471
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 42770741 | 42789877 | - | Seu_jg4471 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 98,472.73 Da | 58.59 | 68.56 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 810 | 850 | 1.31593E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 808 | 855 | 1.1E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 810 | 856 | 9.08E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 796 | 861 | 4.9E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 811 | 850 | 10.704165 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 477 | - | - |
| Coils | Coil | Coil | 740 | 760 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010694518.1 | uncharacterized protein LOC104907301 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QXY6 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_128930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology