Basic Information
Locus ID:
Seu_jg3800
Species & Taxonomic ID:
Salicornia europaea & 206448
Short Name:
TRIP-1
Description:
component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 21840333 | 21843966 | + | Seu_jg3800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 16,045.87 Da | 30.55 | 72.38 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 83 | 146 | 1.92E-11 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 78 | 147 | 5.6E-11 | IPR015943 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 114 | 147 | 8.597424 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 114 | 147 | 8.536777 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46280.3 | TGF-beta receptor interacting protein 1. Encodes a homolog of mammalian TGF-beta receptor interacting protein. Co-immunoprecipitates with BRI1 and can be phosphorylated in vitro by BRI1 at specific sites (Thr-14, Thr-89, and either Thr-197 or Ser-198). May therefore be a cytoplasmic BRI1 substrate and involved in brassinosteroid regulated plant growth and development.The encoded protein has two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_021751883.1 | eukaryotic translation initiation factor 3 subunit I-like [Chenopodium quinoa] | 0 |
| Q38884 | Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana OX=3702 GN=TIF3I1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803KTV0 | Eukaryotic translation initiation factor 3 subunit I OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg36150, Sbi_jg854 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg14697, Seu_jg22036, Seu_jg3800 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl74566, Sgl83234 |