Basic Information
Locus ID:
Seu_jg3774
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 21000340 | 21013845 | - | Seu_jg3774 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 32,780.76 Da | 58.38 | 49.68 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 165 | 208 | 9.65654E-15 | - |
| Pfam | PF14599 | Zinc-ribbon | 212 | 269 | 2.5E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 164 | 207 | 2.2E-9 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 30 | 110 | 8.4E-20 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 101 | 158 | 6.15E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 164 | 211 | 1.39E-11 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 26 | 99 | 1.57E-18 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 210 | 9.6E-13 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 236 | 279 | 2.0E-18 | - |
| SMART | SM00184 | ring_2 | 165 | 207 | 8.3E-8 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 23 | 98 | 25.596586 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 100 | 164 | 31.256842 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 208 | 11.633604 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021851771.1 | E3 ubiquitin-protein ligase MIEL1-like [Spinacia oleracea] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RX36 | RING finger and CHY zinc finger domain-containing protein 1 OS=Spinacia oleracea OX=3562 GN=SOVF_019950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology