Basic Information
Locus ID:
Seu_jg3331
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 12259631 | 12260329 | + | Seu_jg3331 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 26,140.33 Da | 43.42 | 95.65 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 177 | 226 | 4.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 177 | 230 | 4.71E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 232 | 2.1E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 178 | 225 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 178 | 226 | 12.622055 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048493319.1 | E3 ubiquitin-protein ligase ZSWIM2-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q7ZW78 | E3 ubiquitin-protein ligase RNF181 OS=Danio rerio OX=7955 GN=rnf181 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RED9 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_075940 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26583 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13624, Sbi_jg1407, Sbi_jg52269 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20498, Seu_jg3331, Seu_jg9580 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005455 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl55767, Sgl60975, Sgl72806, Sgl73728, Sgl73751, Sgl76345 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2119 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00360.v3.1 |