Basic Information
Locus ID:
Seu_jg3326
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 12221775 | 12227994 | + | Seu_jg3326 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 49,463.16 Da | 48.91 | 71.92 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 314 | 339 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 87 | 346 | 3.16E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 91 | 427 | 6.4E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 256 | 296 | 0.09 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 340 | 0.077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 84 | 121 | 200.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021763109.1 | autophagy-related protein 18a-like [Chenopodium quinoa] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L9Q8 | Autophagy-related protein 18a-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology