Basic Information
Locus ID:
Seu_jg3266
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 11212686 | 11232369 | + | Seu_jg3266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 109,700.38 Da | 43.14 | 77.64 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 62 | 185 | 1.09383E-39 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 203 | 531 | 2.56135E-170 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 205 | 526 | 1.2E-46 | IPR001394 |
| Pfam | PF00917 | MATH domain | 67 | 187 | 1.1E-19 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 630 | 882 | 1.9E-74 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 58 | 194 | 4.91E-41 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 200 | 557 | 9.03E-98 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 808 | 905 | 3.2E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 202 | 530 | 5.6E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 690 | 807 | 2.6E-40 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 58 | 201 | 2.9E-52 | IPR008974 |
| SMART | SM00061 | math_3 | 62 | 166 | 9.1E-22 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 60 | 185 | 38.80098 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 205 | 529 | 40.274933 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 206 | 221 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 445 | 462 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 61 | - | - |
| Coils | Coil | Coil | 542 | 569 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021720606.1 | ubiquitin carboxyl-terminal hydrolase 12 [Chenopodium quinoa] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KRC9 | ubiquitinyl hydrolase 1 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology