Basic Information
Locus ID:
Seu_jg3191
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 10292767 | 10299098 | - | Seu_jg3191 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 75,962.61 Da | 37.33 | 107.21 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 3 | 189 | 5.75E-12 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 137 | 428 | 2.37E-22 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 547 | 673 | 1.1E-10 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 1 | 500 | 7.8E-35 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 542 | 679 | 4.3E-11 | IPR011989 |
| SMART | SM00185 | arm_5 | 315 | 356 | 21.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 8 | 52 | 67.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 542 | 583 | 7.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 270 | 311 | 370.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 180 | 217 | 5.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 218 | 261 | 240.0 | IPR000225 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021720659.1 | U-box domain-containing protein 44-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803KRH3 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6897 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027823 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1554, Sbi_jg34993 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3191, Seu_jg3192 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003380 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72805, Sgl76344 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000035718, gene:ENSEOMG00000037562 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004470, CQ.Regalona.r1.9BG0001160 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30061300, pistato.v30065060 |
| Apiaceae | Apium graveolens | 1 | Ag2G00822 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G003250, scaffold075410G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718312 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.264.V1.1, AsparagusV1_Unassigned.156.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1866 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1922 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1080 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37730, Lb3G18363, Lb3G19221 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1057, evm.TU.LG24.1060 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36720 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3639 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1216 |