Basic Information
Locus ID:
Seu_jg299
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 3181275 | 3182015 | - | Seu_jg299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 28,132.82 Da | 48.34 | 77.64 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 80 | 123 | 6.45051E-18 | - |
| Pfam | PF13639 | Ring finger domain | 80 | 123 | 1.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 76 | 128 | 1.03E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 39 | 129 | 3.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 81 | 122 | 7.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 81 | 123 | 12.54829 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 246 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_021742845.1 | E3 ubiquitin-protein ligase ATL31-like [Chenopodium quinoa] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R620 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_102710 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17018, Sbi_jg17019, Sbi_jg61568, Sbi_jg61569 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg298, Seu_jg299 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008347 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0009140 |