Basic Information
Locus ID:
Seu_jg2989
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 7583682 | 7584272 | + | Seu_jg2989 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 21,995.15 Da | 51.05 | 92.96 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 134 | 193 | 8.8E-12 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 195 | 1.3E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 196 | 5.4E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 135 | 192 | 1.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 193 | 12.636808 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019104916.2 | E3 ubiquitin-protein ligase SIS3 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803LCI4 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah033733 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg1762 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2989 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl73022 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000026581 |