Basic Information
Locus ID:
Seu_jg298
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 3173323 | 3174339 | - | Seu_jg298 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 38,515.62 Da | 53.05 | 79.53 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 138 | 181 | 1.30837E-16 | - |
| Pfam | PF13639 | Ring finger domain | 138 | 181 | 3.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 185 | 7.57E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 186 | 1.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 180 | 2.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 181 | 12.459772 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27420.1 | carbon/nitrogen insensitive 1. Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings. | 0 |
| RefSeq | XP_010694618.2 | RING-H2 finger protein ATL11 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LGA5 | E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0J8BA75 | RING-type domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g094400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17018, Sbi_jg17019, Sbi_jg61568, Sbi_jg61569 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg298, Seu_jg299 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008347 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0009140 |