Basic Information
Locus ID:
Seu_jg28696
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 5643349 | 5655638 | + | Seu_jg28696 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 135,616.17 Da | 56.28 | 79.60 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 567 | 713 | 6.26634E-19 | - |
| CDD | cd12108 | Hr-like | 46 | 176 | 1.02676E-22 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1076 | 1118 | 1.65921E-19 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 567 | 714 | 4.3E-6 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1074 | 1117 | 5.0E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 946 | 1021 | 4.4E-17 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1123 | 1180 | 2.8E-21 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 43 | 178 | 3.1E-8 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1012 | 1069 | 1.44E-16 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1067 | 1122 | 2.83E-8 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 938 | 1002 | 1.57E-17 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 1147 | 1182 | 5.1E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 557 | 765 | 2.1E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 42 | 195 | 8.5E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1069 | 1120 | 1.9E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 300 | 448 | 1.8E-5 | - |
| SMART | SM00184 | ring_2 | 1076 | 1117 | 2.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1076 | 1118 | 11.648357 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1011 | 1075 | 27.267435 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 939 | 1008 | 23.817093 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_021733753.1 | zinc finger protein BRUTUS-like At1g18910 isoform X1 [Chenopodium quinoa] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RX52 | Zinc finger protein BRUTUS-like At1g18910 OS=Spinacia oleracea OX=3562 GN=SOVF_024830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology