Basic Information
Locus ID:
Seu_jg28410
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 2149816 | 2159641 | - | Seu_jg28410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 190,072.47 Da | 47.44 | 66.26 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 1099 | 1138 | 3.07532E-16 | - |
| Pfam | PF00628 | PHD-finger | 1099 | 1141 | 1.6E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 1021 | 1071 | 9.7E-20 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1086 | 1144 | 1.75E-15 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1285 | 1374 | 8.29E-5 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1086 | 1203 | 4.5E-19 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 403 | 415 | 18.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 710 | 722 | 24.0 | IPR017956 |
| SMART | SM00249 | PHD_3 | 1098 | 1139 | 6.5E-13 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 358 | 370 | 2.8 | IPR017956 |
| SMART | SM00249 | PHD_3 | 1140 | 1200 | 23.0 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 551 | 563 | 0.9 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 477 | 489 | 21.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 616 | 628 | 29.0 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1096 | 1141 | 10.202 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1099 | 1138 | - | IPR019786 |
| PRINTS | PR00929 | AT-hook-like domain signature | 614 | 624 | 6.4E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 477 | 487 | 6.4E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 549 | 560 | 6.4E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 911 | 982 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1456 | 1556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1463 | 1493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1498 | 1522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 799 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 919 | 947 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1523 | 1542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 811 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 703 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05380.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RSQ4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology