Basic Information
Locus ID:
Seu_jg28403
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 2076874 | 2078210 | + | Seu_jg28403 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 46,757.11 Da | 36.20 | 86.58 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 60 | 100 | 1.1E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 57 | 111 | 3.27E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 55 | 93 | 1.1E-7 | - |
| SMART | SM00256 | fbox_2 | 57 | 97 | 1.1E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 51 | 97 | 8.729132 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021734160.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A2Z6LHE7 | F-box domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_42400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 7 | gene_13562, gene_18928, gene_18929, gene_19416, gene_4730 ... |
| Amaranthaceae | Atriplex hortensis | 7 | Ah000401, Ah001137, Ah001139, Ah014368, Ah028400, Ah028402 ... |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30749, Sbi_jg58515 |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg20870, Seu_jg28387, Seu_jg28388, Seu_jg28403 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000010129 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5BG0023560, CQ.Regalona.r1.8BG0020740 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1040, evm.TU.LG09.933 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644015 |