Basic Information
Locus ID:
Seu_jg28251
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Universal stress protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000020l | 4407 | 13984 | + | Seu_jg28251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.93 | 25,215.88 Da | 67.66 | 96.16 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00293 | USP_Like | 5 | 123 | 1.35603E-13 | - |
| Pfam | PF00582 | Universal stress protein family | 4 | 142 | 1.5E-13 | IPR006016 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 3 | 142 | 7.37E-14 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 3 | 150 | 6.6E-14 | IPR014729 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48960.1 | Adenine nucleotide alpha hydrolases-like superfamily protein. | 0 |
| RefSeq | XP_010695612.1 | uncharacterized protein LOC104908217 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0J8B8F9 | Usp domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g126000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27353 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19739 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001387 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg30908 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28251 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004830 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54915, Sgl60170 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005113, gene:ENSEOMG00000022438 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0019780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30145990 |
| Apiaceae | Apium graveolens | 1 | Ag4G00684 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G009760 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701948 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2825.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G17129, Ftri9G18976 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G48960.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011768m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g35870.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g006910.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2381 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g02720 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11845 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.436 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022860 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G36664 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.1145, BH02.960, BH07.1244, CH02.1071 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0006910, gene-QOZ80_1BG0055610 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0219180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049488 |
| Poaceae | Oryza coarctata | 2 | Oco01G000520, Oco02G000610 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G091000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206565, Pt_Chr0207301 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G025100, Chr03G002960, Chr05G002870, Chr08G002080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G012200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG002290, gene_TRIDC3BG001170 |
| Poaceae | Triticum aestivum | 3 | TraesCS3B02G007900.1, TraesCS3B02G010600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb126330_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7158 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9833 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.124, evm.TU.LG09.1360 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g04790 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.171 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14277 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10031 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14401 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.275 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010089 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-315 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19056 |
| Salicaceae | Populus euphratica | 2 | populus_peu05257, populus_peu29785 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600076, gene-LOC132633306 |
| Solanaceae | Solanum chilense | 2 | SOLCI005214600, SOLCI006255600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013040, gene-LOC107022831 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.14321_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0805 |
| Zosteraceae | Zostera marina | 1 | Zosma01g06850.v3.1 |