Basic Information
Locus ID:
Seu_jg28193
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
splicing factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 2471813 | 2491396 | - | Seu_jg28193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 125,188.07 Da | 49.80 | 66.37 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 711 | 778 | 7.6E-8 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 835 | 1119 | 5.34E-8 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 584 | 785 | 5.1E-26 | IPR035979 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 54 | 5.8E-9 | IPR036322 |
| Gene3D | G3DSA:3.30.70.330 | - | 685 | 758 | 3.9E-35 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 587 | 780 | 3.9E-35 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1029 | 1121 | 3.0E-8 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 810 | 889 | 1.7E-8 | IPR012677 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 101 | 1.4E-11 | IPR015943 |
| SMART | SM00360 | rrm1_1 | 588 | 666 | 5.7E-5 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 710 | 781 | 7.8E-10 | IPR000504 |
| SMART | SM00320 | WD40_4 | 8 | 48 | 6.9E-9 | IPR001680 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 587 | 670 | 12.151006 | IPR000504 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 15 | 48 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 15 | 48 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 709 | 785 | 11.28118 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 515 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33435.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021849215.1 | uncharacterized protein LOC110788893 [Spinacia oleracea] | 0 |
| Q24562 | Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster OX=7227 GN=U2af50 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q9H6 | RRM domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_204680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27761 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15943 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018258 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg37904, Sbi_jg6050 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28193 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006141 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl00932, Sgl05886, Sgl06010 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001151, gene:ENSEOMG00000031108 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0008450, CQ.Regalona.r1.3BG0008620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30239540 |
| Apiaceae | Apium graveolens | 2 | Ag10G02280, Ag9G01695 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001060, scaffold001442G000080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716253 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.157.V1.1, AsparagusV1_05.2860.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G11908 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G33435.1, AT2G33440.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10016212m.g.v1.0, Thhalv10016911m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g15780.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g018230.2N, BniB08g021210.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g06410 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00490 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG09.264, evm.TU.LG09.265, evm.TU.LG11.767 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022751 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08784 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.5240, BH01.4971, CH01.5573 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0232980 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0411360.1, HORVU.MOREX.r3.4HG0411370.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070977 |
| Poaceae | Oryza coarctata | 2 | Oco05G002380, Oco06G002320 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g72650.1, LOC_Os03g04520.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G487800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0100173, Pt_Chr0100298 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G037780, Chr04G004960, Chr07G006620, Chr12G001660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G553400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4BG056670, gene_TRIDC5AG072420 |
| Poaceae | Zea mays | 1 | Zm00001eb402770_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4565 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4463 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1404 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g16310 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1300 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1619 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1742 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2554 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.460 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001629 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6246 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1992 |
| Salicaceae | Populus euphratica | 1 | populus_peu21573 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610403 |
| Solanaceae | Solanum chilense | 1 | SOLCI002666100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031347 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12579 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1739 |
| Zosteraceae | Zostera marina | 2 | Zosma04g25940.v3.1, Zosma04g25950.v3.1 |