Basic Information
Locus ID:
Seu_jg2819
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000011l | 5448650 | 5449585 | - | Seu_jg2819 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 34,826.29 Da | 69.06 | 65.43 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 110 | 153 | 2.56898E-19 | - |
| Pfam | PF13639 | Ring finger domain | 110 | 153 | 1.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 159 | 2.83E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 158 | 1.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 111 | 152 | 4.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 111 | 153 | 12.518784 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 253 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021761860.1 | RING-H2 finger protein ATL3-like [Chenopodium quinoa] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AAI5 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology