Basic Information
Locus ID:
Seu_jg28177
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Polyubiquitin-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 2021252 | 2022869 | - | Seu_jg28177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.69 | 38,772.71 Da | 40.67 | 91.74 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 133 | 191 | 4.13231E-6 | - |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 133 | 192 | 1.4E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 270 | 342 | 8.56E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 184 | 266 | 2.07E-6 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 267 | 344 | 5.9E-7 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 117 | 197 | 1.3E-6 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 118 | 191 | 10.309861 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 270 | 339 | 9.41707 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024040411.1 | polyubiquitin [Citrus clementina] | 0 |
| TrEMBL | V4RZZ4 | Ubiquitin OS=Citrus clementina OX=85681 GN=CICLE_v10005459mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |