Basic Information
Locus ID:
Seu_jg28173
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Polyubiquitin-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 1923182 | 1956633 | - | Seu_jg28173 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 66,821.04 Da | 32.76 | 97.25 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 157 | 207 | 0.00888819 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 216 | 284 | 0.00328596 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 289 | 355 | 5.58711E-4 | - |
| Pfam | PF00240 | Ubiquitin family | 82 | 125 | 1.2E-4 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 514 | 587 | 1.62E-5 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 79 | 126 | 3.21E-6 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 214 | 285 | 5.63E-7 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 134 | 207 | 2.3E-6 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 287 | 355 | 1.06E-6 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 381 | 433 | 3.03E-6 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 211 | 286 | 1.1E-5 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 287 | 358 | 1.8E-5 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 61 | 129 | 3.5E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 364 | 436 | 4.4E-6 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 137 | 209 | 9.025113 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048497256.1 | polyubiquitin [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A0K9QID1 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15953 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018272 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g048750 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg37865, Sbi_jg37866, Sbi_jg37867, Sbi_jg6020 ... |
| Amaranthaceae | Salicornia europaea | 6 | Seu_jg28171, Seu_jg28173, Seu_jg28174, Seu_jg28175 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0008350, CQ.Regalona.r1.3BG0008450 ... |