Basic Information
Locus ID:
Seu_jg28089
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000021l | 75413 | 81732 | + | Seu_jg28089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 57,333.84 Da | 58.64 | 65.89 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 135 | 187 | 4.54523E-25 | - |
| Pfam | PF00412 | LIM domain | 135 | 189 | 4.6E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 284 | 502 | 2.2E-105 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 161 | 216 | 1.08E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 127 | 160 | 2.77E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 131 | 194 | 1.8E-14 | - |
| SMART | SM00726 | uim | 83 | 102 | 0.68 | IPR003903 |
| SMART | SM00726 | uim | 45 | 64 | 0.09 | IPR003903 |
| SMART | SM00132 | lim_4 | 134 | 186 | 1.4E-12 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 133 | 193 | 12.1672 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 45 | 64 | 10.146433 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 83 | 102 | 9.08741 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 135 | 169 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 455 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_010680936.1 | protein DA1-related 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RQ70 | LIM zinc-binding domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_041660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology