halophFGD

Basic Information

Locus ID: Seu_jg27621

Species & Taxonomic ID: Salicornia europaea & 206448

Genome Assembly:

Description: Phosphatidylinositol 4-kinase gamma

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ptg000010l	13224317	13224562	-	Seu_jg27621

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.22	8,780.07 Da	39.12	110.62	0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00240	Ubiquitin family	39	80	1.1E-7	IPR000626
SUPERFAMILY	SSF54236	Ubiquitin-like	32	80	2.3E-8	IPR029071
Gene3D	G3DSA:3.10.20.90	-	32	81	1.7E-7	-
ProSiteProfiles	PS50053	Ubiquitin domain profile.	30	81	10.614717	IPR000626

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08770 (ubiquitin C)

Pathway:

ko03320 (PPAR signaling pathway) map03320 (PPAR signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G24240.1	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein.
RefSeq	XP_021729102.1	phosphatidylinositol 4-kinase gamma 3-like [Chenopodium quinoa]
Swiss-Prot	Q9FNF8	Phosphatidylinositol 4-kinase gamma 3 OS=Arabidopsis thaliana OX=3702 GN=PI4KG3 PE=2 SV=1
TrEMBL	A0A803L2K5	1-phosphatidylinositol 4-kinase OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg48278
Amaranthaceae	Salicornia europaea	1	Seu_jg27621
Brassicaceae	Arabidopsis thaliana	1	AT1G64470.1
Portulacaceae	Portulaca oleracea	2	evm.TU.LG18.822, evm.TU.LG23.629
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-5435