Basic Information
Locus ID:
Seu_jg275
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000002l | 2937859 | 2950556 | + | Seu_jg275 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 64,290.55 Da | 40.27 | 65.47 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 118 | 161 | 2.03039E-19 | - |
| Pfam | PF13639 | Ring finger domain | 118 | 161 | 2.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 168 | 1.06E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 166 | 6.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 119 | 160 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 119 | 161 | 12.223724 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 289 | - | - |
| Coils | Coil | Coil | 447 | 467 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_021771906.1 | putative RING-H2 finger protein ATL36 [Chenopodium quinoa] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QSM8 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_151370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg46254, Sbi_jg47525 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg17584, Seu_jg21779, Seu_jg275 |