Basic Information
Locus ID:
Seu_jg27235
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RNA polymerase II-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 5702420 | 5706569 | + | Seu_jg27235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 46,170.35 Da | 27.79 | 81.72 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00515 | Tetratricopeptide repeat | 305 | 336 | 1.2E-6 | IPR001440 |
| SUPERFAMILY | SSF48452 | TPR-like | 272 | 386 | 5.7E-28 | IPR011990 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 46 | 241 | 7.06E-5 | IPR011043 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 269 | 397 | 7.5E-34 | IPR011990 |
| SMART | SM00028 | tpr_5 | 306 | 338 | 0.013 | IPR019734 |
| SMART | SM00028 | tpr_5 | 339 | 372 | 19.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 272 | 305 | 0.0085 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 272 | 305 | 9.8829 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56440.2 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021758808.1 | putative F-box/kelch-repeat protein At1g15680 [Chenopodium quinoa] | 0 |
| Q60676 | Serine/threonine-protein phosphatase 5 OS=Mus musculus OX=10090 GN=Ppp5c PE=1 SV=3 | 0 | |
| TrEMBL | A0A803LYJ3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology