Basic Information
Locus ID:
Seu_jg27108
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000010l | 3692328 | 3710126 | + | Seu_jg27108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 115,548.67 Da | 34.20 | 83.11 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 44 | 320 | 3.65977E-175 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 363 | 454 | 4.8E-21 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 45 | 357 | 1.9E-93 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 904 | 1010 | 1.2E-8 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 625 | 821 | 6.1E-41 | IPR011682 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 361 | 455 | 2.09E-28 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 467 | 1014 | 8.16E-131 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 33 | 358 | 2.45E-107 | IPR011330 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 44 | 325 | 3.5E-120 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 472 | 583 | 6.7E-28 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 326 | 403 | 2.9E-29 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 404 | 460 | 3.2E-23 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 890 | 1019 | 3.1E-31 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 604 | 870 | 7.8E-86 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 362 | 436 | 4.5E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_021736050.1 | probable alpha-mannosidase At5g13980 [Chenopodium quinoa] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RLN6 | Alpha-mannosidase OS=Spinacia oleracea OX=3562 GN=SOVF_052620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology