Basic Information
Locus ID:
Seu_jg26494
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 6843946 | 6851960 | + | Seu_jg26494 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 92,792.40 Da | 38.98 | 85.02 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 551 | 684 | 5.53092E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 705 | 747 | 3.0E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 553 | 683 | 2.5E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 512 | 749 | 4.07E-58 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 685 | 766 | 9.4E-95 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 512 | 684 | 9.4E-95 | IPR027417 |
| SMART | SM00382 | AAA_5 | 549 | 686 | 1.7E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 656 | 675 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 489 | - | - |
| Coils | Coil | Coil | 736 | 756 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_010671575.1 | uncharacterized protein LOC104888335 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M029 | AAA domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology