Basic Information
Locus ID:
Seu_jg26430
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 5800377 | 5802333 | + | Seu_jg26430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 43,837.19 Da | 43.00 | 85.69 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 49 | 107 | 5.7E-13 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 340 | 384 | 1.7E-11 | IPR001841 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 173 | 244 | 1.4E-6 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 322 | 386 | 7.07E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 307 | 388 | 4.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 342 | 383 | 2.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 342 | 384 | 12.25323 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010671482.3 | RING-H2 finger protein ATL20 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L2N9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology