Basic Information
Locus ID:
Seu_jg26426
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 5772757 | 5774659 | + | Seu_jg26426 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 41,985.74 Da | 36.14 | 91.64 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 320 | 363 | 3.73375E-15 | - |
| Pfam | PF13639 | Ring finger domain | 319 | 363 | 1.5E-11 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 42 | 99 | 1.4E-10 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 366 | 5.89E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 280 | 367 | 4.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 321 | 362 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 363 | 12.326995 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 25 | 5.0 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021761648.1 | RING-H2 finger protein ATL22-like [Chenopodium quinoa] | 0 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L2M9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology