Basic Information
Locus ID:
Seu_jg26425
Species & Taxonomic ID:
Salicornia europaea & 206448
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ptg000015l | 5768597 | 5770709 | + | Seu_jg26425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 38,692.89 Da | 42.60 | 85.39 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 295 | 338 | 7.62902E-17 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 8 | 74 | 7.6E-8 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 294 | 338 | 6.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 290 | 340 | 8.48E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 342 | 1.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 296 | 337 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 296 | 338 | 12.135206 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048496831.1 | putative RING-H2 finger protein ATL21A isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FL42 | Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L2M9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology